Oligo Synthesis

Custom DNA & RNA
Oligonucleotides

From standard research primers to complex modified RNA — Eton connects researchers with the synthesis capabilities their research demands, backed by a support team at every step.

Request a quote
At a glance
Modifications200+ options
Delivery scaleµg – kg
QC verificationMass spec, every order
DocumentationFull COA included
PackagingTubes, 96 well plates
ShippingLyophilized powder (default)

Custom Oligonucleotide Delivery

Eton provides highly flexible custom DNA and RNA oligonucleotide synthesis and delivery solutions. We support a wide range of chemical modifications, purification methods, and custom packaging/aliquoting options, allowing you to tailor each order to your exact requirements.

Our services offer scalable production from µg to kg quantities, along with rigorous quality control and verification. This flexibility makes our solutions well suited for applications in diagnostics, genome editing, sequencing, and synthetic biology.

What we offer

DNA

Custom DNA Oligos

Short primers, probes, and NGS adapters for research, diagnostics, and gene editing. Available from 5 to 200 bases with multiple purification grades and fast turnaround.

Explore DNA oligos →
RNA

Custom RNA Oligos

High-quality RNA with diverse lengths and multiple modifications, including siRNA, sgRNA, ASO and custom RNA for gene editing, functional studies and nucleic acid research.

Explore RNA oligos →
Modifications

Oligo Modifications

Over 200 chemical modification options — fluorophores, quenchers, backbone chemistries, affinity tags, and spacers — to support qPCR, antisense research, and advanced probe design.

View modification catalog →

Why Eton

01

Quality Verification

All modified oligos are verified by mass spectometry and HPLC detection before shipment. Yoou recieve a complete Certificate of Analysis with every order - not as an an optional upgrade.

02

200+ Chemical Modifications

From simple fluorescent labels to complex backbone chemistries — our modification catalog covers the full range of current research and therapeutic applications.

03

Consistent Quality

Eton minimizes batch-to-batch variation and cross-contamination through strict controls in facility design, production processes, and workflows, ensuring consistent quality across all orders.

04

Every Order Matters

Eton enables rapid response and fast turnaround for your orders. We prioritize flexibility and responsiveness, ensuring every order is handled with care and attention.

200+ modification options

Fluorophores
30+
FAM · CY3 · CY5 · Alexa Fluor series · ATTO series · HEX · ROX · TXR · TAMRA
Quenchers
10+
BHQ1 · BHQ2 · BHQ3 · MGB · DABCYL · ECL · BKHFQ · BBQ-650
Affinity & Conjugation
18+
Biotin · Azide · DBCO · Amino (C6/C12) · Thiol · GalNAc · DIG
Backbone & Suger Mods
15+
PS · 2′-OMe · 2′-F · MOE · LNA · cEt · GNA · TNA · FANA
Nucleobase Mods
12+
m5C · m5dC · m6A · ψ · m1ψ · m5U · 8-oxo-dG
Spacers & Linkers
8+
C3 · C6 · C12 · Sp9 · Sp18 · dSpacer · PC Linker · Trebler
Terminal Mods
8+
3′-InvdT · 3′-ddC · 5′-CHO · 5′-COOH · 5′-Acrydite · 5′-PHO
Dual-Labeled Probes
20+
FAM-BHQ1 · FAM-MGB · HEX-BHQ1 · CY5-BHQ2 · ROX-BHQ2

Designed for every workflow

PCR & Quantitative PCR

Desalt-purified primers for standard PCR. HPLC or PAGE purification required for qPCR hydrolysis probes — quencher-free truncated species elevate background signal and affect Cq values.

NGS Library Preparation

Barcode cross-contamination below 0.05%, verified per lot before shipment. Supporting hybridization-based capture and amplicon-based enrichment designs across major platforms.

CRISPR & Genome Editing

Chemically synthesized crRNA, tracrRNA, and sgRNA components. No DNA carryover — reducing unintended genomic integration risk present in IVT-derived guide components.

IVD & Diagnostics

Custom probes with complete contamination control documentation. E. coli and human DNA contamination testing, NTC signal minimization, and full analytical records for every lot.

Antisense & Therapeutic RNA

Gapmer and fully-modified ASO designs with full phosphorothioate backbone and 2′-OMe, MOE, LNA, or cEt wing modifications. Research to preclinical scale.

Gene Synthesis & Assembly

Building block oligos for gene assembly by overlap-extension PCR. High coupling efficiency and PAGE purification to remove truncated species before assembly use.

Ready to order or need a custom quote?

Our support team is available to assist with any inquiry.

Request a quote

support@etonbio.com

Custom DNA Oligos

Custom DNA Oligonucleotides —
from research primers to diagnostic-grade probes

From µg research primers to kg custom oligos, Eton delivers custom DNA oligonucleotides across the full length range (5–200 bases) — all verified by mass spectrometry before shipment.

Specifications
Synthesis range5–200 nt
PurificationDesalt · OPC · PAGE · HPLC
Modifications200+
Delivery scaleµg – kg
QCMass spec, every order
Guaranteed YieldOrder by desired yleld
Turnaround24–48 hrs (standard)

Reliable oligos for any molecular biology workflow

DNA oligonucleotides are indispensable molecular tools — as PCR primers, hybridization probes, NGS adapters, or the building blocks of gene synthesis. Each application places distinct demands on purity, sequence fidelity, and modification chemistry.

Eton manages the complete ordering workflow — from sequence submission through purification selection, quality verification, and delivery. Our team handles technical consultation, order tracking, and COA documentation, so your lab receives exactly what you ordered, when you need it.

Formats & specifications

Service tierLengthPurificationDelivery scaleTurnaround
Standard5–60 ntDSL / OPC / PAGE / HPLC10 nmol–1 µmol24–48 hrs
Long oligo61–200 ntPAGE / HPLC / Dual PAGE & HPLC10 nmol–1 µmolPer inquiry
Modified oligo5–120 ntPAGE / HPLC / Dual PAGE & HPLC10 nmol–1 µmolPer inquiry
Large-scaleCustomCustommg–kgPer inquiry
Purification guidance: Desalt is sufficient for primers ≤50 nt used in standard PCR. For oligos >60 nt, PAGE or HPLC purification is recommended to remove truncated species and ensure consistent downstream performance.

Modified oligo specifications — contact our team for details on specific modification chemistries, coupling efficiencies, and compatible purification grades.

Probe configurations including dual-labeled probe, double-quenched probe, and molecular beacon formats. Contact us for specifications and available fluorophore/quencher pairings.

NGS adapter and primer specifications available per platform. Contact our team for current adapter designs compatible with your sequencing workflow.

Large-scale synthesis from mg to kilogram quantities. The same quality standard applies — no reformulation or revalidation required for scale-up. Request a quote for pricing and lead times.

From sequence to delivery

01
Submit your sequence
Online or via email. Specify purification grade and delivery scale.
02
Purification review
Our team confirms the right purification options for your application.
03
Quality verification
MS: Deviation ≤±0.3%; HPLC: Main peak area ≥90%
04
Delivery
Lyophilized or in solution, with COA and optional MS chromatogram.

Built for reliability

01

Quality-verified delivery on every order

Every order verified by mass spectrometry before shipment. Full-length product confirmation and a detailed COA provided as standard — not as an optional upgrade.

02

Four purification options, matched to your application

DSL, OPC, PAGE, and HPLC — including dual PAGE+HPLC for demanding applications. Our team recommends the right option for your downstream use case.

03

Scalable from research to production

Same sequence, same quality standard from µg to kilogram quantities. Scale-up does not require reformulation or revalidation of your order.

04

Technical support and sequencing

Application-specific guidance on purification, modification selection, and primer design. Sanger and long-read sequencing available from our laboratories.

Ready to place an order?

Contact our support team for technical consultation or custom quotes.

support@etonbio.com

Custom RNA Oligos

Custom RNA Oligonucleotides —
siRNA, sgRNA, ASO, and beyond

From chemically synthesized siRNA and sgRNA to complex ASOs and modified RNA — all orders verified by mass spectrometry before shipment, with full modification integrity documentation.

Specifications
Synthesis range3–180 nt
PurificationDesalt · PAGE · HPLC
Modifications200+ (2′-OMe, 2′-F, PS, LNA…)
Delivery scaleµg – kg
QCMass spec, every order
DocumentationCOA + MS data

Chemically synthesized RNA — ready to use, rigorously verified

RNA oligonucleotides play central roles in gene silencing (siRNA, miRNA mimics), genome editing (sgRNA), and antisense therapeutics (ASOs). Each application has distinct requirements for length, chemical stability, modification profile, and purity — all of which are addressed through appropriate synthesis chemistry and purification.

All RNA oligonucleotides are managed through an ordering and technical support workflow. Our team confirms modification specifications, purification selection, and delivery requirements before synthesis begins — and every product is mass spectrometry-verified before shipment.

RNA formats & specifications

FormatLengthSpecificationNotePurificationTurnaround
Standard siRNA duplex20-25 bp5 nmol/2 ODStandard unmodified siRNAHPLCInquire
Chemically modified siRNA20-25 bp5 nmol/2 ODIncluding fluorescent labeling and other chemical modificationsHPLCInquire
siRNA Sets20-25 bp5 nmol/2 OD3 or 4 siRNAs+PC+NCHPLCInquire
siRNA Control20-25 bp2.5 nmol/1 ODNegative control sRNA, positive control siRNA, transfection control sRNA, and more available.HPLCInquire
Process-grade20-25 bp≥20 nmol/8 ODLarge-scale synthesisHPLCInquire
ServiceLengthSpecificationNotePurificationTurnaround
sgRNA oligo97–103 nt1.5 nmol/3 nmol/5 nmolFirst and last 3 bases with 2'-OMe and PSOPC/HPLCInquire
crRNA42 nt5 nmol/2 ODCRISPR-Cas system crRNA (Cas9, AsCas12a, LbaCas12a, LwCas13a, PspCas13b, RxCas13d available)HPLCInquire
tracrRNA64 nt3 nmol/2 ODCRISPR-Cas9 tracrRNA, can be duplexed with crRNA to form sgRNAHPLCInquire
ServiceLengthSpecificationModificationPurificationApplication
gapmer-PS-ASO16-20 nt2 OD5 PS at the 3′-end and 5′-end; central DNA gap; all PS backboneHPLCGenerally used for cell experiments
gapmer-2-OMe-ASO16-20 nt2 OD5 2'-OMe at the 3′-end and 5′-end; central DNA gap; all PS backboneHPLCCan be used for animal experiments
gapmer-2-MOE-ASO16-20 nt2 OD5 MOE at the 3′-end and 5′-end; central DNA gap; all PS backboneHPLCCan be used for animal experiments
gapmer-2-LNA-ASO16-20 nt2 OD3 LNA at the 3′-end and 5′-end; central DNA gap; all PS backboneHPLCCan be used for animal experiments
gapmer-cEt-ASO16-20 nt2 OD3 cEt at the 3′-end and 5′-end; central DNA gap; all PS backboneHPLCCan be used for animal experiments
mixer-PS-ASO16-20 nt2 ODPS-ASO, fully modified with PS backbone onlyHPLCGenerally used for cell experiments
mixer-2-OMe-ASO16-20 nt2 OD2'-OMe-ASO, fully modified with 2'-OMe + PS backboneHPLCCan be used for animal experiments
mixer-2-MOE-ASO16-20 nt2 ODMOE-ASO, fully modified with MOE + PS backboneHPLCCan be used for animal experiments
mixer-LNA-ASO16-20 nt2 ODLNA-ASO, fully modified with LNA + PS backboneHPLCCan be used for animal experiments
mixer-cEt-ASO16-20 nt2 ODcEt-ASO, fully modified with cEt + PS backboneHPLCCan be used for animal experiments
Modification guidance: For therapeutic-program ASOs, MOE or cEt gapmer designs are recommended. For research-grade gene knockdown in cell culture, standard 2′-OMe or 2′-F gapmer ASOs are appropriate and more cost-effective. Contact our team to discuss the best design for your target.
ServiceSpecificationPurificationNoteApplication
miRNA mimics5 nmol/2 ODHPLCDouble-stranded RNA, mimics endogenous mature miRNA, used for miRNA gain-of-function studiesin vitro transfection, requires transfection reagent
miRNA inhibitor10 nmol/2 ODHPLCsingle-stranded, chemically modified, antisense oligonucleotide that binds to endogenous miRNA, used for miRNA loss-of-function studiesin vitro transfection, requires transfection reagent
mimics/inhibitor control(NC)1 ODHPLCnegative control with scrambled sequence, no homology to known miRNAsin vitro negative control, use with mimics or inhibitor
miRNA agomir2 ODHPLCchemically modified miRNA mimic with enhanced stability and cellular uptake, suitable for in vivo applicationsin vivo (animal studies), in vitro (no transfection reagent required)
miRNA antagomir2 ODHPLCchemically modified miRNA inhibitor with enhanced stability and cellular uptake, suitable for in vivo applicationsin vivo (animal studies), in vitro (no transfection reagent required)
agomir/antagomir control(NC)2 ODHPLCnegative control for agomir/antagomir, chemically modified scrambled sequencein vivo negative control, use with agomir or antagomir

Custom modified RNA (3–180 nt) with any combination from our 200+ modification catalog — including GalNAc conjugation, lipid attachment, and multi-position backbone chemistries — all with HPLC purification. Contact our team for a project consultation.

From sequence to RNase-free delivery

01
Submit sequence & mods
Online or via email with full modification requirements.
02
Design review
Our team confirms modification placement, purification, and duplex annealing conditions.
03
Quality verification
All products verified by mass spectrometry before shipment.
04
RNase-free delivery
Lyophilized in RNase-free conditions with COA and optional MS chromatogram.

Verified at every position

01

Full chemical modification support

All major therapeutic and research RNA modification chemistries available: 2′-OMe, 2′-F, PS, LNA, cEt, MOE, GalNAc, and more. Modifications verified by mass spectrometry at every position.

02

Mass spectrometry verification on every order

Every RNA oligonucleotide verified by mass spectrometry before shipment. COA includes molecular weight confirmation and modification integrity data.

03

Ready-to-use, RNase-free delivery

All RNA products supplied lyophilized in RNase-free conditions with complete documentation. Fluorescently labeled RNA packaged in light-protective containers.

04

Technical consultation

Our team provides guidance on modification selection, duplex design, delivery strategy, and experimental troubleshooting.

RNA research and therapeutic programs

Gene silencing (siRNA)

Chemically synthesized siRNA duplexes for RNAi-mediated gene knockdown in cell culture and in vivo studies.

Genome editing (sgRNA + Cas9)

Standard and modified sgRNA for CRISPR/Cas9 RNP delivery. No DNA carryover risk compared to IVT-derived guides.

Antisense regulation (ASO)

Gapmer ASOs for RNase H-dependent knockdown. Steric-blocking ASOs inhibit mRNA translation by occupying ribosome binding sites.

miRNA research

miRNA mimics and inhibitors for gain- and loss-of-function studies in cellular and in vivo models.

CRISPR screening libraries

Pooled sgRNA libraries with consistent synthesis and modification quality across hundreds to thousands of sequences.

RNA therapeutics research

Research-to-preclinical scale supply for ASO, siRNA, and modified RNA programs with full analytical documentation.

Questions about your RNA design?

Our team provides modification guidance, duplex design support, and custom quotes.

support@etonbio.com

San Diego Branch

Eton Bioscience, Inc.
9215 Brown Deer Rd,
Suite B
San Diego, CA 92121
support@etonbio.com

North Carolina Branch

400 Park Offices Dr,
Suite 204
Research Triangle Park,
NC 27709
supportnc@etonbio.com

*Boston Branch

132 Charles Street,
Auburndale, MA 02466
Relocating – please send all
samples to our NC branch, pending re-opening of our MA Branch. supportma@etonbio.com

* Relocating – please send all samples to our NC branch, pending re-opening of our Boston Branch